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  5. Sam_g16383

Sam_g16383


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16383

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
AMTR_s00033p00221750 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
AT2G03110 No alias RNA binding;nucleic acid binding 0.03 OrthoFinder output from all 47 species
Adi_g012562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019265 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075983 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g080528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g092270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g117114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05309 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21439 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015632 No alias not classified & original description: CDS=147-1991 0.03 OrthoFinder output from all 47 species
Azfi_s0280.g062273 No alias not classified & original description: CDS=315-2570 0.03 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G052900.1 Ceric.02G052900 not classified & original description: pacid=50583938... 0.02 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.02 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.02 OrthoFinder output from all 47 species
Dac_g11897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g20278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09234 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ehy_g09896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011439001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
GSVIVT01012514001 HEN4 KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01019958001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_03724 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
LOC_Os06g23460.1 LOC_Os06g23460 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Len_g00705 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02093 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Lfl_g03080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g04932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g36442 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05810 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06772 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015180 No alias E3 ubiquitin ligase *(STUBL1/3) & original description:... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016541 No alias not classified & original description: CDS=278-2203 0.03 OrthoFinder output from all 47 species
Sam_g11931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc03g082980.3.1 Solyc03g082980 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc05g007810.3.1 Solyc05g007810 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Solyc11g010840.2.1 Solyc11g010840 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc12g055780.3.1 Solyc12g055780 RNA-binding KH domain-containing protein RCF3... 0.07 OrthoFinder output from all 47 species
Spa_g05212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004486_P005 Zm00001e004486 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 112 164
IPR004088 KH_dom_type_1 662 724
IPR004088 KH_dom_type_1 403 451
IPR004088 KH_dom_type_1 268 333
IPR004088 KH_dom_type_1 485 552
No external refs found!