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  5. Sam_g16318

Sam_g16318


Description : not classified & original description: none


Gene families : OG0007936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007936_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16318

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0168.g054578 No alias not classified & original description: CDS=199-2913 0.04 OrthoFinder output from all 47 species
Cba_g04055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017206 No alias not classified & original description: CDS=106-2811 0.02 OrthoFinder output from all 47 species
Tin_g08857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 430 455
IPR002885 Pentatricopeptide_repeat 688 718
IPR002885 Pentatricopeptide_repeat 111 131
IPR002885 Pentatricopeptide_repeat 216 242
IPR002885 Pentatricopeptide_repeat 720 768
IPR002885 Pentatricopeptide_repeat 461 509
IPR002885 Pentatricopeptide_repeat 778 828
No external refs found!