Sam_g16296

Description : component *(MCM3) of MCM replicative DNA helicase complex & original description: none

Gene families : OG0007520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007520_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g16296
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00257050	MCM3,...	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.06	OrthoFinder output from all 47 species
AT5G46280	MCM3	Minichromosome maintenance (MCM2/3/5) family protein	0.03	OrthoFinder output from all 47 species
Ala_g23792	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Als_g15677	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Aop_g08357	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Aspi01Gene37397.t1	MCM3, Aspi01Gene37397	component *(MCM3) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Aspi01Gene37397.t2	MCM3, Aspi01Gene37397	component *(MCM3) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Azfi_s0003.g007570	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Ceric.33G060500.1	MCM3, Ceric.33G060500	component *(MCM3) of MCM replicative DNA helicase...	0.15	OrthoFinder output from all 47 species
Cre06.g295700	MCM3	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.09	OrthoFinder output from all 47 species
Dac_g11573	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.11	OrthoFinder output from all 47 species
Dcu_g04031	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.13	OrthoFinder output from all 47 species
Ehy_g11651	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
GSVIVT01021426001	MCM3	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.11	OrthoFinder output from all 47 species
Gb_01563	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.12	OrthoFinder output from all 47 species
LOC_Os05g39850.1	MCM3, LOC_Os05g39850	component MCM3 of MCM replicative DNA helicase complex	0.08	OrthoFinder output from all 47 species
Len_g00730	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.11	OrthoFinder output from all 47 species
Lfl_g27704	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.13	OrthoFinder output from all 47 species
MA_138102g0010	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.07	OrthoFinder output from all 47 species
MA_163650g0010	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.1	OrthoFinder output from all 47 species
Mp1g17650.1	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.1	OrthoFinder output from all 47 species
Msp_g08861	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Nbi_g12401	MCM3	not classified & original description: none	0.12	OrthoFinder output from all 47 species
Ppi_g45821	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015488	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Smo90198	MCM3	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.06	OrthoFinder output from all 47 species
Solyc02g070780.4.1	MCM3, Solyc02g070780	component MCM3 of MCM replicative DNA helicase complex	0.11	OrthoFinder output from all 47 species
Spa_g08773	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.15	OrthoFinder output from all 47 species
Tin_g10027	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Zm00001e027296_P001	MCM3, Zm00001e027296	component MCM3 of MCM replicative DNA helicase complex	0.02	OrthoFinder output from all 47 species
Zm00001e031913_P001	MCM3, Zm00001e031913	component MCM3 of MCM replicative DNA helicase complex	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032508	DNA duplex unwinding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
BP	GO:0043462	regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051095	regulation of helicase activity	IEP	HCCA
BP	GO:0051097	negative regulation of helicase activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905774	regulation of DNA helicase activity	IEP	HCCA
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041562	MCM_lid	557	641
IPR001208	MCM_dom	277	500
IPR027925	MCM_N	12	99
IPR033762	MCM_OB	110	240

External Links

No external refs found!

Sam_g16296

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation