Sam_g16226

Description : component *(MSH7) of MSH2-x mismatch repair heterodimers & original description: none

Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g16226

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00242090	MSH7, ATMSH7,...	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AMTR_s00078p00191830	MSH7, ATMSH7,...	DNA damage response.DNA repair mechanisms.mismatch...	0.03	OrthoFinder output from all 47 species
AT3G24495	MSH7, ATMSH7, MSH6-2	MUTS homolog 7	0.02	OrthoFinder output from all 47 species
Adi_g108387	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Als_g31978	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Azfi_s0015.g014037	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Ceric.09G018600.1	MSH6-1, ATMSH6,...	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000489.16	MSH6-1, ATMSH6, MSH6	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre05.g235750	MSH6-1, ATMSH6, MSH6	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01015407001	MSH7, ATMSH7, MSH6-2	DNA damage response.DNA repair mechanisms.mismatch...	0.04	OrthoFinder output from all 47 species
Gb_18995	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Gb_18996	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
LOC_Os09g24220.1	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.04	OrthoFinder output from all 47 species
MA_214705g0010	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp2g14640.1	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.01	OrthoFinder output from all 47 species
Mp7g16850.1	MSH7, ATMSH7, MSH6-2	component MSH7 of MSH2-x mismatch repair heterodimers	0.02	OrthoFinder output from all 47 species
Nbi_g08811	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Solyc01g079520.3.1	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.04	OrthoFinder output from all 47 species
Zm00001e016678_P004	MSH7, ATMSH7,...	component MSH7 of MSH2-x mismatch repair heterodimers	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007695	DNA_mismatch_repair_MutS-lik_N	197	309
IPR007696	DNA_mismatch_repair_MutS_core	502	726
IPR000432	DNA_mismatch_repair_MutS_C	789	982
IPR007860	DNA_mmatch_repair_MutS_con_dom	339	478

External Links

No external refs found!

Sam_g16226

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation