Sam_g16219

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: none

Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g16219

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00104490	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Adi_g108706	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g48837	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Ala_g02676	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.06	OrthoFinder output from all 47 species
Als_g29206	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Aop_g20897	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Aspi01Gene31250.t2	Aspi01Gene31250	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Ceric.04G072000.1	Ceric.04G072000	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Dcu_g46980	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Len_g09763	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Lfl_g15816	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
MA_10432543g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp4g01870.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Pir_g11843	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003618	TFIIS_cen_dom	306	396
IPR012921	SPOC_C	572	710

External Links

No external refs found!

Sam_g16219

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation