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  5. Sam_g16056

Sam_g16056


Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16056

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00125590 AMY3, ATAMY3,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Adi_g022283 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49597 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13965.t1 AMY3, ATAMY3,... alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38425.t1 AMY2, ATAMY2,... alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40723.t1 AMY3, ATAMY3,... alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G028300.1 AMY1, ATAMY1,... alpha amylase & original description: pacid=50617601... 0.02 OrthoFinder output from all 47 species
Dac_g26015 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39307 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020069001 AMY3, ATAMY3 Carbohydrate metabolism.starch... 0.04 OrthoFinder output from all 47 species
GSVIVT01032922001 AMY3, ATAMY3 Carbohydrate metabolism.starch... 0.04 OrthoFinder output from all 47 species
LOC_Os01g25510.1 AMY1, ATAMY1,... Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os06g49970.2 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
LOC_Os09g28400.1 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species
LOC_Os09g28420.1 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Nbi_g25602 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39374 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02338 AMY2, ATAMY2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02358 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025581 AMY1, ATAMY1 alpha amylase & original description: CDS=214-2031 0.03 OrthoFinder output from all 47 species
Solyc03g095710.4.1 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Spa_g12491 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 437 497
IPR006047 Glyco_hydro_13_cat_dom 122 297
No external refs found!