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  5. Sam_g16004

Sam_g16004


Description : not classified & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16004

Target Alias Description ECC score Gene Family Method Actions
Adi_g018595 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Adi_g074564 No alias A1-class (Pepsin) protease & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01806 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aob_g02256 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13460.t1 Aspi01Gene13460 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G050600.1 Ceric.19G050600 not classified & original description: pacid=50576234... 0.02 OrthoFinder output from all 47 species
Ceric.38G012000.1 Ceric.38G012000 not classified & original description: pacid=50579791... 0.03 OrthoFinder output from all 47 species
Dde_g05290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_32150 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Mp3g23720.1 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g10683 No alias A1-class (Pepsin) protease & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000115 No alias platform ATPase CDC48 & original description: CDS=3649-4851 0.04 OrthoFinder output from all 47 species
Tin_g15337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 187 208
IPR000571 Znf_CCCH 124 148
IPR000571 Znf_CCCH 237 263
No external refs found!