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  5. Sam_g15941

Sam_g15941


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15941

Target Alias Description ECC score Gene Family Method Actions
Aev_g09554 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08925 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68805 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22843.t1 Aspi01Gene22843 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene53965.t1 Aspi01Gene53965 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G044900.1 Ceric.18G044900 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g20939 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g61420.1 LOC_Os01g61420 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Ore_g41062 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g23747 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09287 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000757 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008785 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-708 0.02 OrthoFinder output from all 47 species
Tin_g22866 No alias E3 ubiquiTin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026195_P001 Zm00001e026195 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e028813_P001 Zm00001e028813 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 352 394
No external refs found!