Sam_g15602


Description : component *(eL21) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000261 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000261_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15602
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252940 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 39 species
Adi_g043900 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Adi_g043901 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Aev_g05703 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Als_g08626 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Als_g55086 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Aob_g03881 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Aop_g05077 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 39 species
Aop_g09546 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 39 species
Aspi01Gene20055.t1 Aspi01Gene20055 component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Aspi01Gene24168.t1 Aspi01Gene24168 component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Azfi_s0509.g074695 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Cba_g09458 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ceric.10G032200.1 Ceric.10G032200 component *(eL21) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 39 species
Ceric.24G006900.1 Ceric.24G006900 component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Dac_g13798 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Dac_g45402 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Dde_g13227 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Dde_g22082 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
GSVIVT01033444001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 39 species
GSVIVT01033455001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Gb_09077 No alias component RPL21 of LSU proteome component 0.03 OrthoFinder output from all 39 species
LOC_Os03g04750.1 LOC_Os03g04750 component RPL21 of LSU proteome component 0.02 OrthoFinder output from all 39 species
LOC_Os10g32820.1 LOC_Os10g32820 component RPL21 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Len_g11206 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Lfl_g06843 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Msp_g33917 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Msp_g34423 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 39 species
Nbi_g06034 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Pir_g17475 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Pp3c13_2360V3.1 Pp3c13_2360 Translation protein SH3-like family protein 0.03 OrthoFinder output from all 39 species
Pp3c3_5550V3.1 Pp3c3_5550 Translation protein SH3-like family protein 0.04 OrthoFinder output from all 39 species
Ppi_g02594 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Smo170832 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Spa_g21282 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 39 species
Spa_g21283 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Spa_g29344 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Spa_g29345 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Spa_g52174 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Tin_g29829 No alias component *(eL21) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 39 species
Zm00001e000341_P001 Zm00001e000341 component RPL21 of LSU proteome component 0.02 OrthoFinder output from all 39 species
Zm00001e004623_P001 Zm00001e004623 component RPL21 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Zm00001e012727_P001 Zm00001e012727 component RPL21 of LSU proteome component 0.02 OrthoFinder output from all 39 species
Zm00001e038963_P001 Zm00001e038963 component RPL21 of LSU proteome component 0.02 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 1 101
No external refs found!