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  5. Sam_g15512

Sam_g15512


Description : substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) & original description: none


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15512
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Adi_g053952 AFB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07494 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Len_g37276 COI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50974 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Zm00001e038839_P001 AFB5, Zm00001e038839 component TIR1/AFB of auxin receptor complex. component... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR041101 Transp_inhibit 81 126
IPR041567 COI1_F-box 23 60
No external refs found!