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  5. Sam_g15131

Sam_g15131


Description : E3 ubiquitin ligase *(PUB8) & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15131
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00161650 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00038840 PUB22,... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G11840 PUB24 plant U-box 24 0.03 OrthoFinder output from all 47 species
AT3G19380 PUB25 plant U-box 25 0.02 OrthoFinder output from all 47 species
AT3G52450 PUB22 plant U-box 22 0.02 OrthoFinder output from all 47 species
Ala_g05204 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28879 PUB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g40105 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15674.t1 PUB26, Aspi01Gene15674 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17992.t1 PUB25, Aspi01Gene17992 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18452.t1 PUB25, Aspi01Gene18452 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18453.t1 PUB25, Aspi01Gene18453 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19342.t1 PUB26, Aspi01Gene19342 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44325.t1 PUB23, Aspi01Gene44325 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44326.t1 PUB23, Aspi01Gene44326 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre14.g612850 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g18954 PUB25 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026542001 CMPG2, ATCMPG2 U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_02490 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_02633 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g34030.1 PUB23, LOC_Os04g34030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g34140.1 PUB29, ATPUB29,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g13870.1 LOC_Os06g13870 U-box domain-containing protein 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10432813g0010 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_48004g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_52661g0010 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_5536318g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_61761g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_73410g0010 No alias U-box domain-containing protein 31 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Pp3c3_4891V3.1 PUB29, ATPUB29,... plant U-box 26 0.01 OrthoFinder output from all 47 species
Smo416356 PUB26 U-box domain-containing protein 30 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g107980.3.1 PUB26, Solyc01g107980 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc06g074140.1.1 PUB24, Solyc06g074140 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc11g006030.1.1 Solyc11g006030 U-box domain-containing protein 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc11g068940.1.1 PUB24, Solyc11g068940 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e008167_P001 PUB23, Zm00001e008167 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e036030_P001 Zm00001e036030 U-box domain-containing protein 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 7 76
No external refs found!