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  5. Sam_g14954

Sam_g14954


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14954

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
AT3G04130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13623.t1 Aspi01Gene13623 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.02 OrthoFinder output from all 47 species
Ceric.09G082800.1 Ceric.09G082800 not classified & original description: pacid=50587508... 0.03 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.02 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000737.24 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 OrthoFinder output from all 47 species
GSVIVT01012782001 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.01 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.01 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.01 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
LOC_Os01g60010.1 LOC_Os01g60010 Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g38950.1 LOC_Os02g38950 Pentatricopeptide repeat-containing protein At3g04130,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.01 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.01 OrthoFinder output from all 47 species
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.01 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Mp2g13600.1 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.02 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.04 OrthoFinder output from all 47 species
Msp_g26147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01365 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g071280.3.1 Solyc04g071280 Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.03 OrthoFinder output from all 47 species
Spa_g10895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.01 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 430 467
IPR002885 Pentatricopeptide_repeat 570 619
IPR002885 Pentatricopeptide_repeat 190 232
IPR002885 Pentatricopeptide_repeat 539 568
IPR002885 Pentatricopeptide_repeat 153 183
IPR002885 Pentatricopeptide_repeat 507 533
IPR002885 Pentatricopeptide_repeat 398 427
IPR002885 Pentatricopeptide_repeat 469 497
IPR002885 Pentatricopeptide_repeat 356 387
IPR002885 Pentatricopeptide_repeat 256 284
IPR002885 Pentatricopeptide_repeat 636 669
No external refs found!