Sam_g14950

Description : not classified & original description: none

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g14950

Target	Alias	Description	ECC score	Gene Family Method
AT5G50920	HSP93-V, DCA1,...	CLPC homologue 1	0.02	OrthoFinder output from all 47 species
Adi_g010878	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11691	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Als_g63134	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Cba_g20998	HSP93-V, DCA1,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.15G073100.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Ceric.18G061200.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000655.28	HSP93-V, DCA1,...	External stimuli response.temperature.Hsp...	0.02	OrthoFinder output from all 47 species
Dac_g04714	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ehy_g21280	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_1160713g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.03	OrthoFinder output from all 47 species
MA_1712g0010	HSP93-V, DCA1,...	Chaperone protein ClpC, chloroplastic OS=Pisum sativum...	0.02	OrthoFinder output from all 47 species
MA_596288g0010	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_8117g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.03	OrthoFinder output from all 47 species
MA_8475g0010	ATHSP101, HOT1, HSP101	Chaperone protein ClpB1 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Msp_g23938	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Pir_g19845	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Pnu_g23962	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009060	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original...	0.02	OrthoFinder output from all 47 species
Sam_g36359	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g46302	CLPB3, CLPB-P, APG6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g17638	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Zm00001e020255_P001	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004834	tryptophan synthase activity	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001943	UVR_dom	6	41
IPR003959	ATPase_AAA_core	131	244

External Links

No external refs found!

Sam_g14950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation