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  5. Sam_g14917

Sam_g14917


Description : nucleotidyl transferase component *(TRL) of TRAMP RNA-exosome-regulation complex & original description: none


Gene families : OG0001897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001897_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14917

Target Alias Description ECC score Gene Family Method Actions
Als_g20422 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Aob_g06675 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Aop_g11641 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63757.t1 Aspi01Gene63757 nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Dcu_g50905 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
GSVIVT01014349001 No alias No description available 0.02 OrthoFinder output from all 47 species
Mp3g05650.1 No alias poly(A) RNA polymerase (TRF4) 0.01 OrthoFinder output from all 47 species
Mp6g17640.1 No alias poly(A) RNA polymerase (TRF4) 0.02 OrthoFinder output from all 47 species
Ppi_g42208 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Tin_g44927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 167 204
IPR002058 PAP_assoc 337 395
No external refs found!