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Sam_g14486


Description : component *(uL3) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14486
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Adi_g045425 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000025.50 RPL3B, ARP2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre10.g417700 RP1, RPL3A, emb2207, ARP1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dac_g13025 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Mp1g18990.1 RPL3B, ARP2 component RPL3 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Msp_g08488 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e001224_P002 RP1, RPL3A,... component RPL3 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e008122_P001 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e008127_P001 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e009065_P002 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 25 394
No external refs found!