Sam_g14403

Description : regulatory protein *(COB) of cellulose-hemicellulose network assembly & original description: none

Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g14403

Target	Alias	Description	ECC score	Gene Family Method
AT4G27110	COBL11	COBRA-like protein 11 precursor	0.02	OrthoFinder output from all 47 species
Adi_g021950	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Ceric.30G011700.1	SEB1, COBL7,...	regulatory protein *(COB) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Dcu_g01570	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Lfl_g06176	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Nbi_g04364	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026278	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Solyc03g114890.4.1	IRX6, COBL4,...	COB cellulose microfibrils and hemicellulose interaction protein	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010215	cellulose microfibril organization	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0030198	extracellular matrix organization	None	Extended
BP	GO:0043062	extracellular structure organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006918	COBRA_pln	249	430

External Links

No external refs found!