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  5. Sam_g14285

Sam_g14285


Description : component *(MCM2) of MCM replicative DNA helicase complex & original description: none


Gene families : OG0004206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004206_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14285
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242770 MCM2, ATMCM2,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder output from all 47 species
AT1G44900 MCM2, ATMCM2 minichromosome maintenance (MCM2/3/5) family protein 0.09 OrthoFinder output from all 47 species
Ala_g28049 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Als_g05684 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Als_g06371 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Aop_g09602 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Aspi01Gene05001.t1 MCM2, ATMCM2,... component *(MCM2) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Aspi01Gene10831.t1 MCM2, ATMCM2,... component *(MCM2) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Azfi_s0207.g057897 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Ceric.10G002200.1 MCM2, ATMCM2,... component *(MCM2) of MCM replicative DNA helicase... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.77 MCM2, ATMCM2 DNA replication licensing factor MCM2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre07.g338000 MCM2, ATMCM2 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.06 OrthoFinder output from all 47 species
Dac_g07583 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Dcu_g07094 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Ehy_g18175 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
GSVIVT01001119001 MCM2, ATMCM2 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.11 OrthoFinder output from all 47 species
Gb_10893 MCM2, ATMCM2 component MCM2 of MCM replicative DNA helicase complex 0.08 OrthoFinder output from all 47 species
LOC_Os11g29380.1 MCM2, ATMCM2,... component MCM2 of MCM replicative DNA helicase complex 0.05 OrthoFinder output from all 47 species
Len_g09187 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Lfl_g39064 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
MA_10431703g0010 MCM2, ATMCM2 DNA replication licensing factor MCM2 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
Mp3g00130.1 MCM2, ATMCM2 component MCM2 of MCM replicative DNA helicase complex 0.06 OrthoFinder output from all 47 species
Msp_g13902 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Nbi_g03122 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Pp3c1_34820V3.1 MCM2, ATMCM2, Pp3c1_34820 minichromosome maintenance (MCM2/3/5) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g15758 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023976 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Smo88537 MCM2, ATMCM2 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.03 OrthoFinder output from all 47 species
Solyc11g040120.3.1 MCM2, ATMCM2,... component MCM2 of MCM replicative DNA helicase complex 0.07 OrthoFinder output from all 47 species
Spa_g05361 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.12 OrthoFinder output from all 47 species
Tin_g44536 MCM2, ATMCM2 component *(MCM2) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Zm00001e021446_P001 MCM2, ATMCM2,... component MCM2 of MCM replicative DNA helicase complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0032508 DNA duplex unwinding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR041562 MCM_lid 207 291
IPR001208 MCM_dom 2 174
No external refs found!