Sam_g14121

Description : component *(uL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g14121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00089p00040540	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT3G07110	No alias	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
AT3G24830	No alias	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
AT5G48760	No alias	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Aev_g06438	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g12384	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g26514	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g62167	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g06902	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0075.g037721	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0272.g061284	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0594.g078801	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g09451	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.05G058300.1	Ceric.05G058300	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.20G024700.1	Ceric.20G024700	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000792.29	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Cre12.g532550	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g00316	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g34535	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g02053	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g22051	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01021080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os03g54890.1	LOC_Os03g54890	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Lfl_g02672	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g21734	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_186340g0010	No alias	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Msp_g06781	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_17280V3.1	Pp3c11_17280	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Pp3c19_10330V3.1	Pp3c19_10330	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Pp3c1_15830V3.1	Pp3c1_15830	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Pp3c2_20550V3.1	Pp3c2_20550	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Ppi_g25630	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018558	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g06363	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo166650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc05g053670.3.1	Solyc05g053670	component RPL13a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc09g091740.4.1	Solyc09g091740	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g10532	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g15627	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g15628	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g00453	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e005719_P002	Zm00001e005719	component RPL13a of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e012017_P002	Zm00001e012017	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	11	116

External Links

No external refs found!

Sam_g14121

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation