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  5. Sam_g13887

Sam_g13887


Description : not classified & original description: none


Gene families : OG0002028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002028_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13887

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00164270 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Adi_g011582 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
Ala_g06113 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.04 OrthoFinder output from all 47 species
Als_g30303 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
Aop_g08994 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
Cba_g14237 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
Ceric.07G044000.1 Ceric.07G044000 not classified & original description: pacid=50627215... 0.04 OrthoFinder output from all 47 species
Ceric.08G016500.1 Ceric.08G016500 not classified & original description: pacid=50638572... 0.04 OrthoFinder output from all 47 species
Ceric.1Z123400.1 Ceric.1Z123400 nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.04 OrthoFinder output from all 47 species
Dac_g06530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49204 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.03 OrthoFinder output from all 47 species
Ehy_g04036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26942 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01034601001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
Gb_18080 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Gb_35130 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Len_g30747 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.04 OrthoFinder output from all 47 species
Len_g32864 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
Lfl_g14234 No alias nuclear lamina CRWN-interacting protein *(KAKU4) &... 0.05 OrthoFinder output from all 47 species
MA_87384g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g05990.1 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Ore_g28862 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10463 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.03 OrthoFinder output from all 47 species
Pir_g66188 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012850 No alias not classified & original description: CDS=3-2681 0.03 OrthoFinder output from all 47 species
Solyc05g055110.4.1 Solyc05g055110 NUP1/NUP136 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Solyc11g006390.2.1 Solyc11g006390 NUP1/NUP136 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Spa_g06717 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.05 OrthoFinder output from all 47 species
Spa_g07621 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.03 OrthoFinder output from all 47 species
Spa_g09277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06136 No alias nucleoporin of nuclear pore complex *(NUP1/NUP136) &... 0.02 OrthoFinder output from all 47 species
Zm00001e005928_P001 Zm00001e005928 NUP1/NUP136 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!