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  5. Sam_g13844

Sam_g13844


Description : regulatory protein *(RCF3) of HYL1-phosphorylation & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13844
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
AT2G03110 No alias RNA binding;nucleic acid binding 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16566 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g25451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06699 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.03 OrthoFinder output from all 47 species
Ceric.32G028300.1 Ceric.32G028300 not classified & original description: pacid=50598029... 0.02 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.03 OrthoFinder output from all 47 species
Dac_g09565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g13470.1 LOC_Os01g13470 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os09g32300.1 LOC_Os09g32300 KH domain-containing protein HEN4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430861g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_108374g0010 No alias KH domain-containing protein HEN4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
MA_71572g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g13376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g32267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34355 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05810 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ore_g06772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008079 No alias not classified & original description: CDS=527-2194 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009457 No alias not classified & original description: CDS=528-2219 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020404 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Sam_g08472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo73985 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc01g106020.3.1 HEN4, Solyc01g106020 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc05g007810.3.1 Solyc05g007810 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc12g055780.3.1 Solyc12g055780 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g07199 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36753 PEP not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 413 478
IPR004088 KH_dom_type_1 168 235
IPR004088 KH_dom_type_1 581 644
IPR004088 KH_dom_type_1 54 106
IPR004088 KH_dom_type_1 329 378
No external refs found!