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Sam_g13797


Description : calcium-permeable channel *(OSCA) & original description: none


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13797

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00254340 evm_27.TU.AmTr_v1... Solute transport.channels.OSCA calcium-permeable channel 0.02 OrthoFinder output from all 47 species
Adi_g020490 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0094.g043422 No alias calcium-permeable channel *(OSCA) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os10g42820.1 LOC_Os10g42820 calcium-permeable channel (OSCA) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR032880 Csc1/OSCA1-like_N 9 171
IPR027815 CSC1/OSCA1-like_cyt 192 349
IPR003864 CSC1/OSCA1-like_7TM 362 627
No external refs found!