Sam_g13761


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13761

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04893 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene12777.t1 Aspi01Gene12777 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39665 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06728 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 OrthoFinder output from all 47 species
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
Nbi_g19610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023267 No alias not classified & original description: CDS=111-2933 0.02 OrthoFinder output from all 47 species
Spa_g15195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52939 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13974 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e040095_P002 Zm00001e040095 Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 680 727
IPR002885 Pentatricopeptide_repeat 76 115
IPR002885 Pentatricopeptide_repeat 601 659
IPR002885 Pentatricopeptide_repeat 136 184
IPR002885 Pentatricopeptide_repeat 367 391
IPR002885 Pentatricopeptide_repeat 544 572
No external refs found!