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  5. Sam_g13752

Sam_g13752


Description : not classified & original description: none


Gene families : OG0006886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13752

Target Alias Description ECC score Gene Family Method Actions
AT3G13180 No alias NOL1/NOP2/sun family protein / antitermination NusB... 0.02 OrthoFinder output from all 47 species
Azfi_s0292.g063407 No alias not classified & original description: CDS=68-1600 0.03 OrthoFinder output from all 47 species
Ceric.10G067000.1 Ceric.10G067000 not classified & original description: pacid=50612186... 0.03 OrthoFinder output from all 47 species
Dcu_g12857 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01522 No alias RsmB-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24104 No alias RsmB-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g02490.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g39122 No alias RsmB-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06384 No alias RsmB-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010024_P001 Zm00001e010024 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 5 148
No external refs found!