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  5. Sam_g13644

Sam_g13644


Description : not classified & original description: none


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13644

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0021.g015637 No alias not classified & original description: CDS=1-2424 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Dac_g39654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os12g29660.1 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Lfl_g05640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Pir_g18860 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g59335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g081580.4.1 Solyc04g081580 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Tin_g11999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010143_P002 Zm00001e010143 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Zm00001e034676_P001 Zm00001e034676 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 391 496
IPR011545 DEAD/DEAH_box_helicase_dom 180 350
No external refs found!