Sam_g13536

Description : SSU processome assembly factor *(UTP21) & original description: none

Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g13536

Target	Alias	Description	ECC score	Gene Family Method
AT4G04940	No alias	transducin family protein / WD-40 repeat family protein	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021348.51	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g02020	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g18111	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
LOC_Os06g43690.1	LOC_Os06g43690	SSU processome assembly factor (UTP21)	0.03	OrthoFinder output from all 47 species
Lfl_g16684	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Mp3g13780.1	No alias	SSU processome assembly factor (UTP21)	0.03	OrthoFinder output from all 47 species
Solyc01g087670.3.1	Solyc01g087670	SSU processome assembly factor (UTP21)	0.02	OrthoFinder output from all 47 species
Zm00001e037473_P002	Zm00001e037473	SSU processome assembly factor (UTP21)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
MF	GO:0060590	ATPase regulator activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	479	510
IPR001680	WD40_repeat	557	593
IPR007319	SSU_processome_Utp21	701	915
IPR024977	Apc4_WD40_dom	198	284

External Links

No external refs found!