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  5. Sam_g13385

Sam_g13385


Description : E3 ubiquitin ligase *(PIRE) & original description: none


Gene families : OG0001463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13385

Target Alias Description ECC score Gene Family Method Actions
AT3G48070 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g016724 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G068100.1 Ceric.05G068100 E3 ubiquitin ligase *(PIRE) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01032580001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g37030.1 LOC_Os02g37030 RING-C2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os04g38970.2 LOC_Os04g38970 RING-C2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MpVg01180.1 No alias No annotation 0.03 OrthoFinder output from all 47 species
Ore_g15798 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37146 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g071270.3.1 Solyc06g071270 RING-C2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!