Sam_g13184

Description : component *(eL15) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0002002 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g13184

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00111p00023340	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT4G16720	No alias	Ribosomal protein L23/L15e family protein	0.05	OrthoFinder output from all 47 species
AT4G17390	No alias	Ribosomal protein L23/L15e family protein	0.09	OrthoFinder output from all 47 species
Adi_g011907	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aev_g46320	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g09138	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00218	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aspi01Gene36533.t1	Aspi01Gene36533	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0148.g053106	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g11183	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.30G015200.1	Ceric.30G015200	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.31G036200.1	Ceric.31G036200	component *(eL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000310.75	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Cre02.g091100	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dac_g12320	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g36045	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01007404001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01014039001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01018183001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Gb_32917	No alias	component RPL15 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Gb_36986	No alias	component RPL15 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os03g40180.1	LOC_Os03g40180	component RPL15 of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os05g19370.1	LOC_Os05g19370	component RPL15 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Lfl_g29958	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_29804g0010	No alias	component RPL15 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp1g06500.1	No alias	component RPL15 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Msp_g17670	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g01701	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g41630	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g30101	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c17_22180V3.1	Pp3c17_22180	Ribosomal protein L23/L15e family protein	0.05	OrthoFinder output from all 47 species
Ppi_g08995	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g36073	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo270259	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc04g008460.4.1	Solyc04g008460	component RPL15 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Solyc06g060400.3.1	Solyc06g060400	component RPL15 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc06g064630.3.1	Solyc06g064630	component RPL15 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Spa_g26060	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g26061	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g39098	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g55931	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g30457	No alias	component *(eL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e010380_P001	Zm00001e010380	component RPL15 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e032897_P001	Zm00001e032897	component RPL15 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e034995_P001	Zm00001e034995	component RPL15 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e034996_P001	Zm00001e034996	component RPL15 of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005672	transcription factor TFIIA complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000439	Ribosomal_L15e	2	190

External Links

No external refs found!

Sam_g13184

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation