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  5. Sam_g12734

Sam_g12734


Description : component *(eS17) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001873_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12734
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00243530 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder output from all 47 species
AT2G04390 No alias Ribosomal S17 family protein 0.09 OrthoFinder output from all 47 species
AT2G05220 No alias Ribosomal S17 family protein 0.22 OrthoFinder output from all 47 species
AT3G10610 No alias Ribosomal S17 family protein 0.23 OrthoFinder output from all 47 species
AT5G04800 No alias Ribosomal S17 family protein 0.17 OrthoFinder output from all 47 species
Adi_g017904 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Adi_g041928 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ala_g00332 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g19425 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Als_g00421 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aob_g06294 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12251 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Aop_g30259 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Aop_g31689 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0144.g051553 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Cba_g01433 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.34G021400.1 Ceric.34G021400 component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.34G043500.1 Ceric.34G043500 component *(eS17) of small ribosomal-subunit (SSU)... 0.25 OrthoFinder output from all 47 species
Cre12.g498250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder output from all 47 species
Dac_g03550 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Dac_g26225 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g08562 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Dcu_g21263 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g28501 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Dde_g17744 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g08830 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01033920001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
GSVIVT01034653001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Gb_20256 No alias component RPS17 of SSU proteome 0.2 OrthoFinder output from all 47 species
LOC_Os03g01900.1 LOC_Os03g01900 component RPS17 of SSU proteome 0.1 OrthoFinder output from all 47 species
LOC_Os10g27190.1 LOC_Os10g27190 component RPS17 of SSU proteome 0.09 OrthoFinder output from all 47 species
Len_g33956 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g58133 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Lfl_g28410 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_184894g0010 No alias component RPS17 of SSU proteome 0.2 OrthoFinder output from all 47 species
Mp8g18950.1 No alias component RPS17 of SSU proteome 0.26 OrthoFinder output from all 47 species
Msp_g19559 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Msp_g43078 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g00393 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pir_g57667 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c11_2540V3.1 Pp3c11_2540 Ribosomal S17 family protein 0.19 OrthoFinder output from all 47 species
Pp3c2_34780V3.1 Pp3c2_34780 Ribosomal S17 family protein 0.14 OrthoFinder output from all 47 species
Pp3c7_21070V3.1 Pp3c7_21070 Ribosomal S17 family protein 0.05 OrthoFinder output from all 47 species
Pp3c7_21140V3.1 Pp3c7_21140 Ribosomal S17 family protein 0.19 OrthoFinder output from all 47 species
Ppi_g11751 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g23609 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g32630 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g57893 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004150 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Smo270936 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Solyc05g055230.2.1 Solyc05g055230 component RPS17 of SSU proteome 0.32 OrthoFinder output from all 47 species
Solyc10g150146.1.1 Solyc10g150146 component RPS17 of SSU proteome 0.24 OrthoFinder output from all 47 species
Solyc11g006690.1.1 Solyc11g006690 component RPS17 of SSU proteome 0.2 OrthoFinder output from all 47 species
Spa_g10597 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Spa_g44094 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Tin_g00206 No alias component *(eS17) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Zm00001e030769_P001 Zm00001e030769 component RPS17 of SSU proteome 0.08 OrthoFinder output from all 47 species
Zm00001e036233_P001 Zm00001e036233 component RPS17 of SSU proteome 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001210 Ribosomal_S17e 1 120
No external refs found!