Sam_g12467

Description : subunit beta *(CCT2) of CCT chaperonin folding complex & original description: none

Gene families : OG0005353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005353_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g12467

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00149p00026500	evm_27.TU.AmTr_v1...	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.02	OrthoFinder output from all 47 species
AT5G20890	No alias	TCP-1/cpn60 chaperonin family protein	0.04	OrthoFinder output from all 47 species
Azfi_s0251.g060285	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Cba_g07275	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Cba_g15823	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Ceric.02G085300.1	Ceric.02G085300	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.30	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.01	OrthoFinder output from all 47 species
Cre09.g416750	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.05	OrthoFinder output from all 47 species
Dcu_g14728	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Dde_g07090	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01008708001	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.08	OrthoFinder output from all 47 species
LOC_Os03g42220.1	LOC_Os03g42220	CCT2 subunit beta of CCT chaperonin folding complex	0.06	OrthoFinder output from all 47 species
LOC_Os05g48290.3	LOC_Os05g48290	CCT2 subunit beta of CCT chaperonin folding complex	0.05	OrthoFinder output from all 47 species
MA_10434959g0010	No alias	CCT2 subunit beta of CCT chaperonin folding complex	0.04	OrthoFinder output from all 47 species
Mp5g16030.1	No alias	CCT2 subunit beta of CCT chaperonin folding complex	0.06	OrthoFinder output from all 47 species
Nbi_g03110	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Ore_g15486	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Pir_g03082	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Pp3c6_15940V3.1	Pp3c6_15940	TCP-1/cpn60 chaperonin family protein	0.02	OrthoFinder output from all 47 species
Smo171093	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.04	OrthoFinder output from all 47 species
Solyc11g069000.2.1	Solyc11g069000	CCT2 subunit beta of CCT chaperonin folding complex	0.05	OrthoFinder output from all 47 species
Spa_g11138	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e017228_P001	Zm00001e017228	CCT2 subunit beta of CCT chaperonin folding complex	0.06	OrthoFinder output from all 47 species
Zm00001e025595_P002	Zm00001e025595	CCT2 subunit beta of CCT chaperonin folding complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	32	520

External Links

No external refs found!

Sam_g12467

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation