Sam_g12462


Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: none


Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12462

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.03 OrthoFinder output from all 47 species
Adi_g021649 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Als_g08940 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Ceric.20G017700.1 SVR1, Ceric.20G017700 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Cre02.g095121 SVR1 RNA processing.RNA... 0.02 OrthoFinder output from all 47 species
Dac_g04133 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Dcu_g06821 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Gb_12891 SVR1 rRNA pseudouridine synthase (RsuA) 0.02 OrthoFinder output from all 47 species
LOC_Os03g05806.1 SVR1, LOC_Os03g05806 rRNA pseudouridine synthase (RsuA) 0.04 OrthoFinder output from all 47 species
Len_g30464 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Lfl_g16475 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.05 OrthoFinder output from all 47 species
Mp1g28730.1 SVR1 rRNA pseudouridine synthase (RsuA) 0.02 OrthoFinder output from all 47 species
Msp_g21846 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Pnu_g06316 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Ppi_g18476 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.05 OrthoFinder output from all 47 species
Solyc11g008360.3.1 SVR1, Solyc11g008360 rRNA pseudouridine synthase (RsuA) 0.02 OrthoFinder output from all 47 species
Spa_g22396 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Zm00001e000423_P001 SVR1, Zm00001e000423 rRNA pseudouridine synthase (RsuA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 112 157
IPR006145 PsdUridine_synth_RsuA/RluA 175 317
No external refs found!