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  5. Sam_g12353

Sam_g12353


Description : not classified & original description: none


Gene families : OG0004838 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004838_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12353

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00095730 EDA7,... No description available 0.02 OrthoFinder output from all 47 species
Aev_g17027 EDA7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08338 EDA7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.46 EDA7 No description available 0.03 OrthoFinder output from all 47 species
Cre03.g159950 EDA7 No description available 0.02 OrthoFinder output from all 47 species
Dcu_g10961 EDA7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g03780.1 EDA7, LOC_Os06g03780 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp7g13920.1 EDA7 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Smo126756 EDA7 No description available 0.02 OrthoFinder output from all 47 species
Solyc10g085580.3.1 EDA7, Solyc10g085580 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012580 NUC153 484 512
No external refs found!