1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g12169

Sam_g12169


Description : component *(uL24) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000884 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000884_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12169
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00214810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AMTR_s00065p00088770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
AT3G49910 No alias Translation protein SH3-like family protein 0.17 OrthoFinder output from all 47 species
AT5G67510 No alias Translation protein SH3-like family protein 0.18 OrthoFinder output from all 47 species
Adi_g041472 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g079333 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g121686 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g127529 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g15510 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g33821 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Ala_g37339 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g24670 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g58453 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aob_g02606 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g18010 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g68629 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aspi01Gene44990.t1 Aspi01Gene44990 component *(uL24) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0003.g008074 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0064.g035484 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g10903 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g20992 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g66118 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g70452 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.06G075600.1 Ceric.06G075600 component *(uL24) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Ceric.25G058400.1 Ceric.25G058400 component *(uL24) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.25G058700.1 Ceric.25G058700 component *(uL24) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.60 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Cre01.g040000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Dac_g26116 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.23 OrthoFinder output from all 47 species
Dac_g26942 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dac_g27086 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g07393 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g24782 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g27600 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g18149 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01030972001 No alias 60S ribosomal protein L26-1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_05675 No alias component RPL26 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Gb_06102 No alias component RPL26 of LSU proteome component 0.19 OrthoFinder output from all 47 species
LOC_Os01g04730.1 LOC_Os01g04730 component RPL26 of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os11g05370.1 LOC_Os11g05370 component RPL26 of LSU proteome component 0.11 OrthoFinder output from all 47 species
LOC_Os12g05430.1 LOC_Os12g05430 component RPL26 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Len_g25530 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Len_g44310 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Lfl_g05207 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g06903 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g28317 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_13141g0010 No alias component RPL26 of LSU proteome component 0.21 OrthoFinder output from all 47 species
MA_158811g0010 No alias component RPL26 of LSU proteome component 0.11 OrthoFinder output from all 47 species
MA_162587g0010 No alias component RPL26 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp2g12870.1 No alias component RPL26 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Msp_g33144 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g37577 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g00193 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ore_g08094 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g08095 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g06360 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g13997 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g30785 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c14_25170V3.1 Pp3c14_25170 Translation protein SH3-like family protein 0.19 OrthoFinder output from all 47 species
Pp3c1_25000V3.1 Pp3c1_25000 Translation protein SH3-like family protein 0.11 OrthoFinder output from all 47 species
Pp3c2_15910V3.1 Pp3c2_15910 Translation protein SH3-like family protein 0.14 OrthoFinder output from all 47 species
Ppi_g23265 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g25677 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g27585 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g33996 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ppi_g36832 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g40592 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001854 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005329 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05724 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g30646 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo227399 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Solyc02g064670.1.1 Solyc02g064670 component RPL26 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc02g092430.1.1 Solyc02g092430 component RPL26 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Solyc03g044000.1.1 Solyc03g044000 component RPL26 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Spa_g06853 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g43201 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Spa_g54872 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Tin_g16183 No alias component *(uL24) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e004042_P001 Zm00001e004042 component RPL26 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Zm00001e016957_P001 Zm00001e016957 component RPL26 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e025774_P001 Zm00001e025774 component RPL26 of LSU proteome component 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
CC GO:0015934 large ribosomal subunit IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR005756 Ribosomal_L26/L24P_euk/arc 8 121
IPR005824 KOW 51 82
No external refs found!