AMTR_s00029p00062590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.57

Description : Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000000 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0000000 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00062590
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G02010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.03 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00021312.67 No alias No description available 0.01 Archaeplastida
GSVIVT01000034001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_17092 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.03 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.02 Archaeplastida
LOC_Os06g41040.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
LOC_Os07g39090.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os08g33700.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Archaeplastida
LOC_Os08g40020.1 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
LOC_Os10g26070.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_2991g0010 No alias RNA editing factor (MEF12) 0.02 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 Archaeplastida
Pp3c14_16110V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo118492 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo74762 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Smo88824 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Solyc03g120460.4.1 No alias No annotation 0.02 Archaeplastida
Solyc04g076330.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.03 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.03 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.02 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.05 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e028503_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.03 LandPlants
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT3G02010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 LandPlants
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 LandPlants
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 LandPlants
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 LandPlants
GSVIVT01024588001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 LandPlants
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Gb_02086 No alias RNA editing factor (OTP82) 0.02 LandPlants
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 LandPlants
Gb_17092 No alias RNA editing factor (OTP82) 0.02 LandPlants
Gb_17294 No alias RNA editing factor (MEF3) 0.02 LandPlants
Gb_18914 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 LandPlants
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 LandPlants
LOC_Os01g27650.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 LandPlants
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.03 LandPlants
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.02 LandPlants
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 LandPlants
LOC_Os08g40020.1 No alias RNA editing factor (MEF19) 0.02 LandPlants
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 LandPlants
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 LandPlants
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 LandPlants
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 LandPlants
Pp3c5_15090V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
Smo108652 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 LandPlants
Smo99647 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 LandPlants
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 LandPlants
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.02 LandPlants
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 LandPlants
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 LandPlants
Solyc04g005770.3.1 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 LandPlants
Solyc04g051480.1.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
Solyc04g076330.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 LandPlants
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.02 LandPlants
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 LandPlants
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.02 LandPlants
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 LandPlants
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.02 LandPlants
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.02 LandPlants
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 LandPlants
Zm00001e002505_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e006453_P001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.02 LandPlants
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 LandPlants
Zm00001e014825_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 LandPlants
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 LandPlants
Zm00001e021380_P001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 LandPlants
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 LandPlants
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.02 LandPlants
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.02 SeedPlants
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 SeedPlants
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 SeedPlants
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 SeedPlants
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 SeedPlants
GSVIVT01024588001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 SeedPlants
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Gb_02086 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.01 SeedPlants
Gb_17092 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_17294 No alias RNA editing factor (MEF3) 0.02 SeedPlants
Gb_18914 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 SeedPlants
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 SeedPlants
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 SeedPlants
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 SeedPlants
LOC_Os08g40020.1 No alias RNA editing factor (MEF19) 0.02 SeedPlants
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 SeedPlants
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 SeedPlants
Solyc04g005770.3.1 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 SeedPlants
Solyc04g051480.1.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
Solyc04g076330.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 SeedPlants
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.02 SeedPlants
Solyc06g060050.1.1 No alias Pentatricopeptide repeat-containing protein At5g15340,... 0.03 SeedPlants
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 SeedPlants
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.02 SeedPlants
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 SeedPlants
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.02 SeedPlants
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.02 SeedPlants
Zm00001e002505_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e006453_P001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.02 SeedPlants
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 SeedPlants
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 SeedPlants
Zm00001e021380_P001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 SeedPlants
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 313 339
IPR002885 Pentatricopeptide_repeat 554 582
IPR002885 Pentatricopeptide_repeat 490 511
IPR002885 Pentatricopeptide_repeat 386 412
IPR002885 Pentatricopeptide_repeat 209 256
IPR002885 Pentatricopeptide_repeat 413 460
IPR002885 Pentatricopeptide_repeat 108 156
No external refs found!