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  5. Sam_g12127

Sam_g12127


Description : transport protein *(NiCoT) & original description: none


Gene families : OG0002485 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002485_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12127

Target Alias Description ECC score Gene Family Method Actions
Aev_g03791 No alias transport protein *(NiCoT) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18213 No alias transport protein *(NiCoT) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15838 No alias transport protein *(NiCoT) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13031 No alias transport protein *(NiCoT) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g02580.1 LOC_Os06g02580 transport protein (NiCoT) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR039447 UreH-like_TM_dom 189 336
No external refs found!