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  5. Sam_g12051

Sam_g12051


Description : plastidial transcript stability factor *(HCF152) & original description: none


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12051

Target Alias Description ECC score Gene Family Method Actions
Aev_g20509 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
Ala_g09008 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
Aob_g07350 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Cba_g11157 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Ceric.28G004500.1 CRM3, HCF152,... plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Ehy_g23058 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01025536001 CRM3, HCF152 RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Gb_16885 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
LOC_Os12g01210.1 CRM3, HCF152,... HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
Len_g11883 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Lfl_g03303 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
MA_11675g0010 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.02 OrthoFinder output from all 47 species
Mp1g13160.1 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
Nbi_g15156 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Pir_g17540 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Pnu_g08944 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Zm00001e020088_P001 CRM3, HCF152,... HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 523 584
IPR002885 Pentatricopeptide_repeat 592 652
IPR002885 Pentatricopeptide_repeat 464 513
IPR002885 Pentatricopeptide_repeat 243 290
IPR002885 Pentatricopeptide_repeat 430 458
No external refs found!