1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g12046

Sam_g12046


Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12046

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00141830 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
Adi_g098002 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110090 ARF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33211 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Cba_g19294 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37448 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.93 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g16914 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08602 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
LOC_Os04g59430.1 ARF17, LOC_Os04g59430 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Len_g15328 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Ore_g38754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42998 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30468 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-3375 0.03 OrthoFinder output from all 47 species
Sam_g04734 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51847 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10839 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29160 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004181 metallocarboxypeptidase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 344 427
IPR003340 B3_DNA-bd 161 261
No external refs found!