Sam_g11854


Description : component *(mS22) of small mitoribosomal-subunit proteome & original description: none


Gene families : OG0005774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005774_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11854
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G64600 No alias methyltransferases;copper ion binding 0.02 OrthoFinder output from all 47 species
Als_g12396 No alias component *(mS22) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.15G029800.1 Ceric.15G029800 not classified & original description: pacid=50639591... 0.03 OrthoFinder output from all 47 species
GSVIVT01019613001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os07g20150.1 LOC_Os07g20150 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g05200.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g14874 No alias component *(mS22) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc08g082880.4.1 Solyc08g082880 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006412 translation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR015324 Ribosomal_Rsm22-like 301 379
IPR015324 Ribosomal_Rsm22-like 107 274
No external refs found!