Sam_g11781


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11781

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00127300 MEF22,... Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g099287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03503 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03801 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23653 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23961 REME1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g23992 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28669 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g37414 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0021.g015813 No alias not classified & original description: CDS=355-3027 0.05 OrthoFinder output from all 47 species
Azfi_s0058.g034473 No alias not classified & original description: CDS=1-2799 0.05 OrthoFinder output from all 47 species
Azfi_s0095.g043579 CRR22 not classified & original description: CDS=1-3435 0.05 OrthoFinder output from all 47 species
Azfi_s0102.g044571 No alias not classified & original description: CDS=1-2829 0.05 OrthoFinder output from all 47 species
Azfi_s0236.g059504 No alias not classified & original description: CDS=1-2307 0.04 OrthoFinder output from all 47 species
Azfi_s0237.g059606 No alias not classified & original description: CDS=1-2121 0.05 OrthoFinder output from all 47 species
Ceric.07G024400.1 Ceric.07G024400 not classified & original description: pacid=50626298... 0.03 OrthoFinder output from all 47 species
Ceric.15G015100.1 CRR22, Ceric.15G015100 not classified & original description: pacid=50640379... 0.03 OrthoFinder output from all 47 species
Ceric.30G007900.1 Ceric.30G007900 not classified & original description: pacid=50608292... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01003124001 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017996001 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01021246001 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
GSVIVT01035837001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_15507 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Gb_23320 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_26816 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_27329 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Gb_28758 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_41804 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.02 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33700.1 LOC_Os08g33700 Pentatricopeptide repeat-containing protein At3g47530... 0.02 OrthoFinder output from all 47 species
Len_g05407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43024 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g07993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g19069 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g11883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38541 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g06449 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007299 No alias not classified & original description: CDS=1-3327 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013695 No alias not classified & original description: CDS=1-2949 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016681 No alias not classified & original description: CDS=1-2460 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021578 MEF19 not classified & original description: CDS=1-1950 0.04 OrthoFinder output from all 47 species
Spa_g18079 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55591 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07829 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.04 OrthoFinder output from all 47 species
Zm00001e041246_P001 Zm00001e041246 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 12 39
IPR002885 Pentatricopeptide_repeat 49 71
No external refs found!