1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g11607

Sam_g11607


Description : component *(LUX) of circadian clock Evening complex (EC) & original description: none


Gene families : OG0000124 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000124_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11607

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00108840 ARR1, RR1,... RNA biosynthesis.transcriptional activation.ARR-B... 0.03 OrthoFinder output from all 47 species
Adi_g080126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50793 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59212 ARR11 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25629 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009615 ARR10, RR10 subgroup ARR-B transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g01716 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39028 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05928 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_15501 ARR1, RR1 B-type cytokinin ARR response activator. transcription... 0.02 OrthoFinder output from all 47 species
Lfl_g06674 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_83273g0010 ARR1, RR1 B-type cytokinin ARR response activator. transcription... 0.02 OrthoFinder output from all 47 species
Mp4g21220.1 LUX, PCL1 component LUX of circadian clock Evening complex (EC) 0.02 OrthoFinder output from all 47 species
Nbi_g30461 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
Ore_g34775 LUX, PCL1 MYB-RELATED transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g25281 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66612 ARR1, RR1 subgroup ARR-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12888 LUX, PCL1 component *(LUX) of circadian clock Evening complex (EC)... 0.02 OrthoFinder output from all 47 species
Ppi_g05219 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32628 RR12, ARR12 subgroup ARR-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g076350.3.1 Solyc06g076350 component LUX of circadian clock Evening complex (EC) 0.02 OrthoFinder output from all 47 species
Spa_g02524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016123_P001 RR12, ARR12,... B-type cytokinin ARR response activator. transcription... 0.02 OrthoFinder output from all 47 species
Zm00001e018507_P001 LUX, PCL1, Zm00001e018507 component LUX of circadian clock Evening complex (EC) 0.02 OrthoFinder output from all 47 species
Zm00001e028258_P001 Zm00001e028258 Transcription factor PCL1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e036325_P002 RR12, ARR12,... B-type cytokinin ARR response activator. transcription... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 167 215
No external refs found!