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  5. Sam_g11604

Sam_g11604


Description : component *(LUG/LUH) of transcriptional co-repressor complex & original description: none


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11604
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00094620 LUG, RON2,... RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
AT2G32700 LUH LEUNIG_homolog 0.02 OrthoFinder output from all 47 species
Adi_g011009 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Adi_g067892 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Adi_g105962 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Aev_g10016 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Ala_g09330 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Als_g29035 LUG, RON2 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Als_g61871 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Cba_g06869 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Ceric.35G054400.1 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Dcu_g39318 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
GSVIVT01028646001 LUH RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
GSVIVT01035791001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
Gb_02946 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Gb_10345 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Gb_10347 LUG, RON2 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os01g42260.1 LUG, RON2, LOC_Os01g42260 transcriptional co-repressor (LUG) 0.05 OrthoFinder output from all 47 species
Lfl_g07408 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
MA_34795g0010 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Mp1g15050.1 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Ore_g06587 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Pnu_g18168 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Smo410492 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
Smo79275 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.02 OrthoFinder output from all 47 species
Solyc02g078000.2.1 LUH, Solyc02g078000 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Solyc06g065640.3.1 LUG, RON2, Solyc06g065640 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Spa_g51440 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Zm00001e006449_P002 LUH, Zm00001e006449 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Zm00001e020658_P005 LUG, RON2, Zm00001e020658 transcriptional co-repressor (LUG) 0.08 OrthoFinder output from all 47 species
Zm00001e027845_P004 LUG, RON2, Zm00001e027845 transcriptional co-repressor (LUG) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 519 555
IPR001680 WD40_repeat 601 635
IPR001680 WD40_repeat 474 511
IPR001680 WD40_repeat 434 469
IPR001680 WD40_repeat 700 721
No external refs found!