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  5. Sam_g11292

Sam_g11292


Description : component *(MSI1) of PRC2 histone methylation complex & original description: none


Gene families : OG0001615 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001615_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11292
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT2G16780 MSI2, NFC2, NFC02, MSI02 Transducin family protein / WD-40 repeat family protein 0.05 OrthoFinder output from all 47 species
AT5G58230 MSI1, MEE70, ATMSI1 Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aop_g05698 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.07 OrthoFinder output from all 47 species
Ceric.19G012200.1 MSI1, MEE70,... component *(MSI1) of PRC2 histone methylation complex &... 0.05 OrthoFinder output from all 47 species
Cre12.g523200 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Dac_g08708 MSI1, MEE70, ATMSI1 component *(CAF1c/MSI) of CAF1 histone chaperone complex... 0.07 OrthoFinder output from all 47 species
Dac_g38232 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.07 OrthoFinder output from all 47 species
Ehy_g04579 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Gb_32820 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex.... 0.02 OrthoFinder output from all 47 species
LOC_Os09g36900.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
Len_g05275 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
MA_10429996g0010 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex 0.02 OrthoFinder output from all 47 species
MA_10432677g0010 MSI1, MEE70, ATMSI1 Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_142023g0010 MSI1, MEE70, ATMSI1 WD-40 repeat-containing protein MSI1 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Mp4g21020.1 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex.... 0.01 OrthoFinder output from all 47 species
Nbi_g09174 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g62818 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.05 OrthoFinder output from all 47 species
Solyc01g111590.4.1 MSI2, NFC2,... component CAF1c/MSI of CAF1 histone chaperone complex 0.06 OrthoFinder output from all 47 species
Tin_g09251 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.1 OrthoFinder output from all 47 species
Zm00001e035979_P001 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 19 88
IPR001680 WD40_repeat 308 346
IPR001680 WD40_repeat 264 302
IPR001680 WD40_repeat 367 402
No external refs found!