Sam_g11215


Description : not classified & original description: none


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00067630 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
AMTR_s00149p00067730 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39761.t1 Aspi01Gene39761 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0262.g060841 No alias not classified & original description: CDS=82-2085 0.03 OrthoFinder output from all 47 species
Dac_g15325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Len_g02383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_283144g0010 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species
Msp_g09352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01171 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12890 SVR7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo442013 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species
Spa_g04939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.04 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 312 360
IPR002885 Pentatricopeptide_repeat 195 255
IPR002885 Pentatricopeptide_repeat 421 449
IPR002885 Pentatricopeptide_repeat 457 484
IPR002885 Pentatricopeptide_repeat 385 412
No external refs found!