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  5. Sam_g10827

Sam_g10827


Description : RNA splicing factor *(SCL28/30/33) & original description: none


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10827

Target Alias Description ECC score Gene Family Method Actions
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.04 OrthoFinder output from all 47 species
Aop_g69799 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20596.t1 At-SCL30A,... RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Cre01.g038650 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre13.g586916 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Pnu_g17217 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004666 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 108
No external refs found!