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  5. Sam_g10479

Sam_g10479


Description : not classified & original description: none


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10479
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Adi_g089268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70936.t1 Aspi01Gene70936 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009714 No alias not classified & original description: CDS=1-2130 0.03 OrthoFinder output from all 47 species
Azfi_s0097.g043875 No alias not classified & original description: CDS=257-2656 0.04 OrthoFinder output from all 47 species
Cba_g02696 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G061400.1 Ceric.01G061400 not classified & original description: pacid=50592672... 0.02 OrthoFinder output from all 47 species
Ceric.03G036200.1 Ceric.03G036200 not classified & original description: pacid=50571952... 0.07 OrthoFinder output from all 47 species
Ceric.11G091600.1 Ceric.11G091600 not classified & original description: pacid=50596008... 0.03 OrthoFinder output from all 47 species
Ceric.16G010400.1 Ceric.16G010400 not classified & original description: pacid=50589761... 0.02 OrthoFinder output from all 47 species
Ceric.19G017900.1 Ceric.19G017900 not classified & original description: pacid=50576444... 0.04 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.04 OrthoFinder output from all 47 species
Ceric.39G058300.1 Ceric.39G058300 not classified & original description: pacid=50582561... 0.07 OrthoFinder output from all 47 species
Dac_g22799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.01 OrthoFinder output from all 47 species
Len_g03366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Mp5g07730.1 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.01 OrthoFinder output from all 47 species
Msp_g06308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003004 No alias not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017150 No alias not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Spa_g09030 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016802_P001 Zm00001e016802 Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 219
IPR002885 Pentatricopeptide_repeat 645 681
IPR002885 Pentatricopeptide_repeat 525 584
IPR002885 Pentatricopeptide_repeat 297 340
No external refs found!