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  5. Sam_g10309

Sam_g10309


Description : component *(uS2) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10309
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.09 OrthoFinder output from all 47 species
AT3G04770 RPSAb 40s ribosomal protein SA B 0.03 OrthoFinder output from all 47 species
Adi_g077457 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g117456 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Adi_g127034 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g06615 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g07397 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0252.g060323 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cba_g20932 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.10G044300.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.38G026900.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cre10.g432800 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dac_g13313 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g29763 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01016695001 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_02349 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os03g08440.1 P40, AP40,... component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g42450.1 P40, AP40,... component RPSa of SSU proteome 0.06 OrthoFinder output from all 47 species
MA_10436984g0020 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
MA_112104g0010 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp2g26290.1 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.11 OrthoFinder output from all 47 species
Msp_g20402 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Msp_g39218 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c14_15670V3.1 P40, AP40,... 40s ribosomal protein SA 0.02 OrthoFinder output from all 47 species
Pp3c14_15700V3.1 P40, AP40,... 40s ribosomal protein SA B 0.02 OrthoFinder output from all 47 species
Pp3c14_17310V3.1 P40, AP40,... 40s ribosomal protein SA B 0.02 OrthoFinder output from all 47 species
Pp3c17_17600V3.1 P40, AP40,... 40s ribosomal protein SA 0.06 OrthoFinder output from all 47 species
Ppi_g02754 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g10537 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g33193 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05957 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g08753 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g08754 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g35485 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g42338 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Solyc03g019780.4.1 P40, AP40,... component RPSa of SSU proteome 0.09 OrthoFinder output from all 47 species
Solyc06g072120.3.1 P40, AP40,... component RPSa of SSU proteome 0.06 OrthoFinder output from all 47 species
Spa_g04678 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g04679 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g21179 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g44344 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Zm00001e000273_P001 P40, AP40,... component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e010780_P001 P40, AP40,... component RPSa of SSU proteome 0.07 OrthoFinder output from all 47 species
Zm00001e038859_P001 P40, AP40,... component RPSa of SSU proteome 0.08 OrthoFinder output from all 47 species
Zm00001e038860_P002 P40, AP40,... component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e038933_P001 P40, AP40,... component RPSa of SSU proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
InterPro domains Description Start Stop
IPR032281 40S_SA_C 208 296
IPR001865 Ribosomal_S2 112 180
No external refs found!