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  5. Sam_g10292

Sam_g10292


Description : not classified & original description: none


Gene families : OG0001003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001003_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10292

Target Alias Description ECC score Gene Family Method Actions
AT1G19680 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g023501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g15630.1 LOC_Os01g15630 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 303 362
No external refs found!