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  5. Sam_g09683

Sam_g09683


Description : scaffold component *(CUL3) of CUL3-BTB E3 ligase complexes & original description: none


Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g09683
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT1G69670 CUL3B, ATCUL3B cullin 3B 0.02 OrthoFinder output from all 47 species
AT5G46210 ATCUL4, CUL4 cullin4 0.02 OrthoFinder output from all 47 species
Als_g06802 ATCUL4, CUL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18973 ATCUL4, CUL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08433 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Aop_g07404 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene12486.t1 ATCUL4, CUL4,... scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ceric.05G009200.1 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.110 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.111 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020934.33 CUL3B, ATCUL3B Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Cre07.g324050 ATCUL3A, ATCUL3,... Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dcu_g13417 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ehy_g02848 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
GSVIVT01020008001 ATCUL3A, ATCUL3,... Cullin-3A OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
LOC_Os02g51180.1 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.03 OrthoFinder output from all 47 species
LOC_Os03g57290.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Len_g07971 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Len_g37354 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Lfl_g02234 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.04 OrthoFinder output from all 47 species
MA_10436569g0010 ATCUL3A, ATCUL3,... Cullin-3A OS=Arabidopsis thaliana (sp|q9zvh4|cul3a_arath : 422.0) 0.02 OrthoFinder output from all 47 species
MA_36374g0010 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana (sp|q8lgh4|cul4_arath : 352.0) 0.06 OrthoFinder output from all 47 species
MA_7251626g0010 CUL3B, ATCUL3B Cullin-3B OS=Arabidopsis thaliana (sp|q9c9l0|cul3b_arath : 114.0) 0.01 OrthoFinder output from all 47 species
Mp1g07340.1 ATCUL4, CUL4 scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Msp_g05342 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ore_g17472 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Pir_g14749 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013899 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Smo172620 ATCUL4, CUL4 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Smo98006 ATCUL3A, ATCUL3,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc01g010820.3.1 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.03 OrthoFinder output from all 47 species
Solyc02g021470.4.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Solyc02g070460.3.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Solyc02g087900.3.1 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.03 OrthoFinder output from all 47 species
Tin_g02089 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Zm00001e005919_P001 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Zm00001e040141_P001 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 664 724
IPR001373 Cullin_N 29 632
No external refs found!