Sam_g09219

Description : phytochrome photoreceptor *(PHY) & original description: none

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g09219
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00153850	FHY2, HY8, PHYA,...	External stimuli response.light.red/far red light.PHY...	0.03	OrthoFinder output from all 47 species
Aev_g07985	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g23487	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09133.t1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g04116	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g12690	HY3, OOP1, PHYB	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g32315	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g24766	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g071260.3.1	PHYE, Solyc02g071260	phytochrome photoreceptor (PHY). temperature sensor...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003018	GAF	224	405
IPR013767	PAS_fold	623	738
IPR013767	PAS_fold	754	809
IPR013515	Phytochrome_cen-reg	418	591
IPR013654	PAS_2	73	190

External Links

No external refs found!