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  5. Sam_g09153

Sam_g09153


Description : protein involved in PS-II assembly *(Psb28) & original description: none


Gene families : OG0005594 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005594_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g09153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00160690 PSB28,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT4G28660 PSB28 photosystem II reaction center PSB28 protein 0.05 OrthoFinder output from all 47 species
Aev_g03543 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Ala_g08604 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Als_g06924 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Cba_g20107 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G032000.1 PSB28, Ceric.07G032000 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Cre10.g440450 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g09174 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g46324 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g01982 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028434001 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Lfl_g34843 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
MA_18349g0010 PSB28 Psb28 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Mp2g14630.1 PSB28 Psb28 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Msp_g08495 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Msp_g12017 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Ore_g32149 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Pir_g15698 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g01103 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g14394 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022654 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Smo85520 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Solyc09g064500.3.1 PSB28, Solyc09g064500 Psb28 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Spa_g21623 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR005610 PSII_Psb28_class-1 90 195
No external refs found!