Sam_g09028

Description : LAV-VAL-type transcription factor & original description: none

Gene families : OG0001383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001383_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g09028

Target	Alias	Description	ECC score	Gene Family Method
Cre13.g562400	HSI2, VAL1	B3 domain-containing transcription repressor VAL1...	0.01	OrthoFinder output from all 47 species
MA_10427807g0010	HSL1, VAL2, HSI2-L1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ore_g28522	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g15060	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g15431	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0035673	oligopeptide transmembrane transporter activity	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
MF	GO:1904680	peptide transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	212	310

External Links

No external refs found!